Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866261:139866301:[+] chr17:38792218:38792252:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCU 3'


            || :||| ||||||: ||| || :||||


target  3':CCAAGAGGAAAG--AGGUACGC----UCUAACAGAGACAGC 5'

 -18.60 1 RIC-seq
chrX:139866261:139866325:[+] chr17:38792218:38792284:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUC----UUC--CCUCAAAUCCAUAGCUUC----CGAA 3'


            || :||| ||||||: ||| || :|||| ||| |||| || :|||||| |||


target  3':CCAAGAGGAAAG--AGGUACGC----UCUAACAGAGACAGCUGAAAGAAGGAGAUUUC--GUCGAAGACGUGCUG 5'

 -30.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:38792218:38792252:[-] target 1425601 chr17:38792231-38792232 C>A Familial_meningioma|Hereditary_cancer-predisposing_syndrome ClinVar
chr17:38792218:38792284:[-] target 1425601 chr17:38792231-38792232 C>A Familial_meningioma|Hereditary_cancer-predisposing_syndrome ClinVar
chr17:38792218:38792284:[-] target 1069790 chr17:38792252-38792253 G>A Familial_meningioma|Hereditary_cancer-predisposing_syndrome ClinVar
chr17:38792218:38792284:[-] target 532251 chr17:38792269-38792270 GC>A Familial_meningioma ClinVar
chrX:139866261:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC