Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865656:139865683:[+] chr5:225550:225582:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAG-----CUAAUCCAUGUCUUCCAGAA 3'


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target  3':UGGAGGUCAACAGGAGGAGGUACAAGGGGUCUC 5'

 -30.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:225550:225582:[+] target 2930481 chr5:225553-225554 TG>T Paragangliomas_5|Mitochondrial_complex_II_deficiency,_nuclear_type_1 ClinVar
chr5:225550:225582:[+] target 3438670 chr5:225564-225565 G>T Hereditary_cancer-predisposing_syndrome ClinVar
chr5:225550:225582:[+] target 2945284 chr5:225571-225572 AC>A Paragangliomas_5|Mitochondrial_complex_II_deficiency,_nuclear_type_1 ClinVar
chr5:225550:225582:[+] target 856810 chr5:225577-225578 G>A Paragangliomas_5|Gastrointestinal_stromal_tumor|Mitochondrial_complex_II_deficiency,_nuclear_type_1|Hereditary_cancer-predisposing_syndrome|not_provided ClinVar