Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865861:139865887:[+] chr2:102507782:102507808:[+] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAC-CAAAUCCAGGUCUUCCA 3'


            |:|:|| || ||| :|: ||||


target  3':ACGGGAGCCACGUCGAGGCUCG--AGGUC 5'

 -17.10 29 RIC-seq
chrX:139866216:139866235:[+] chr2:102509651:102509672:[+] nonBSJ supported 3UTR

circRNA 5': GGAAAUCCGUGUCUU-CCAGC 3'


            ||| |||||| ||||


target  3':ACCUACAUGAACAGAAUGGUCU 5'

 -16.30 2 RIC-seq
chrX:139866256:139866290:[+] chr2:102509650:102509684:[+] nonBSJ supported 3UTR

circRNA 5':AGC---CAUGUCUUCCAG-ACUAUCCAUGUCUU-CCAGAA 3'


            || |||| ||| |||||| |||||


target  3':ACGUAAGUACUCACCUACAUGA-----ACAGAAUGGUCUA 5'

 -17.70 13 RIC-seq
chrX:139866258:139866290:[+] chr2:102509650:102509678:[+] nonBSJ supported 3UTR

circRNA 5':CCAUGUCUUCCAG-ACUAUCCAUGUCUU-CCAGAA 3'


            |||| ||| |||||| |||||


target  3': GUACUCACCUACAUGA-----ACAGAAUGGUCUA 5'

 -16.30 11 RIC-seq
chrX:139865857:139865880:[+] chr2:102480410:102480434:[+] nonBSJ supported CDS

circRNA 5': UCU-ACGUCUUCCACCAAAUCCAGG 3'


            ||| || |||| |: ||


target  3':GAGACUGACUC--GUGGAGUGACGCCC 5'

 -7.70 1 RIC-seq
chrX:139865857:139865881:[+] chr2:102480410:102480434:[+] nonBSJ supported CDS

circRNA 5': UCU-ACGUCUUCCACCAAAUCCAGGU 3'


            ||| || |||| |: ||


target  3':GAGACUGACUC--GUGGAGUGACGCCC 5'

 -8.40 1 RIC-seq
chrX:139865933:139865963:[+] chr2:102503649:102503684:[+] nonBSJ supported CDS

circRNA 5':UAUGUCU--------UCCUGAAGAUCCACGUCUUCCAGA 3'


            ||||| |||||| ||||||:|| |||


target  3':UUACAGUAUCUGACUAGGACU--UAGGUGUAGUU-GUCG 5'

 -25.50 56 RIC-seq
chrX:139866300:139866326:[+] chr2:102504300:102504328:[+] nonBSJ supported CDS

circRNA 5':CUUCCCUCAAAUCCAUAGCUU-CC-GAAA 3'


            |:|||||| | |||||| || |||


target  3':UGGGGGAGUAGAAGUAUCGUGUGGUCUUC 5'

 -22.40 25 RIC-seq
chrX:139866300:139866335:[+] chr2:102504301:102504328:[+] nonBSJ supported CDS

circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGU 3'


            |:|||||| | |||||| ||||:


target  3':UGGGGGAGUAGAAGUAUCGUGU--------GGUCUU 5'

 -23.10 1 RIC-seq
chrX:139866606:139866625:[+] chr2:102505282:102505299:[+] nonBSJ supported CDS

circRNA 5': CUUCCUAUAUCUCCAGGUCU 3'


            |||| ||:|||| :|


target  3':GGAAGAG---AGGGGUCGGGU 5'

 -16.60 9 RIC-seq
chrX:139866610:139866680:[+] chr2:102505282:102505344:[+] nonBSJ supported CDS

circRNA 5':CUAUAUC-UCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUU 3'


            ||:|:| ||||:|| |||| |||| :| || |||: |:|||| ||:||| |:|:


target  3':UGUGUGGUAGGUUCACU-GGUCAA--AGGUGUCU-AGCCUAGAGAUAC-CGGAAGAG---AGGGGU-CGGGU 5'

 -46.50 16 RIC-seq
chrX:139866621:139866673:[+] chr2:102505304:102505351:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCAUC-UCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCC 3'


            |: :||:| ||||:| |||| ||::| :|| |||||


target  3':ACGUACUUGUGUGGUAGGUUCACU-GGUCAAAGGUGUCUAGCC-----UAGAGA 5'

 -29.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:102505282:102505344:[+] target 3870333 chr2:102505311-102505312 C>T Inborn_genetic_diseases ClinVar
chr2:102505304:102505351:[+] target 3870333 chr2:102505311-102505312 C>T Inborn_genetic_diseases ClinVar
chrX:139866300:139866326:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866300:139866335:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC