Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865961:139866003:[+] chr8:42028402:42028451:[+] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCAUGUCUUCCAGA-------AAAUCCAUGU-CUUCCAGUAACC 3'


            |||| ||| ||| ||| |||: ||: ||| || ||||


target  3':ACUUUGUCCUACUCAAGAUCUCCUUUAUUUUGACGACGUGAAUGU--UUGGA 5'

 -11.80 6 RIC-seq
chrX:139865961:139866004:[+] chr8:42028401:42028451:[+] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCAUGUCUUCCAGA-------AAAUCCAUGU-CUUCCAGUAACCU 3'


            |||| ||| ||| ||| |||: ||: ||| || |||||


target  3':ACUUUGUCCUACUCAAGAUCUCCUUUAUUUUGACGACGUGAAUGU--UUGGAU 5'

 -13.40 35 RIC-seq
chrX:139865971:139865979:[+] chr8:42028453:42028461:[+] nonBSJ supported 3UTR

circRNA 5':UGU-CUUCCA 3'


            || |||||


target  3': CAUGAAGGG 5'

 -6.80 1 RIC-seq
chrX:139865971:139865991:[+] chr8:42028439:42028461:[+] nonBSJ supported 3UTR

circRNA 5':UGU-CUUCCA--GAAAAUCCAUGU 3'


            || ||||| |||| |||


target  3': CAUGAAGGGAACUUUGUCCUACU 5'

 -8.30 1 RIC-seq
chrX:139865971:139865999:[+] chr8:42028431:42028461:[+] nonBSJ supported 3UTR

circRNA 5':UGU-CUUCCA--GAAAAUCCAUGUCUUCCAGU 3'


            || ||||| |||| ||| ||| ||


target  3': CAUGAAGGGAACUUUGUCCUACUCAAGAUCU 5'

 -11.60 2 RIC-seq