Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865505:139865517:[+] chr5:149929301:149929316:[+] nonBSJ supported CDS

circRNA 5': CUCCAAGU--CUUCC 3'


            |:||||| ||||


target  3':UGGGGUUCCUUGAAGA 5'

 -12.60 1 RIC-seq
chrX:139865505:139865537:[+] chr5:149929309:149929351:[+] nonBSJ supported CDS

circRNA 5': CUCCAAGUCUUCCA-GUAAAUCAA--------GUC-UUCCAGC 3'


            | ||||| ||| |||| ||| ::|||:


target  3':UGCGGUUCCAAAACACCAUC-AGUUACCACAACCAGUGGGGUUC 5'

 -12.50 11 RIC-seq
chrX:139865508:139865537:[+] chr5:149929309:149929348:[+] nonBSJ supported CDS

circRNA 5': CAAGUCUUCCA-GUAAAUCAA--------GUC-UUCCAGC 3'


            |||| ||| |||| ||| ::|||:


target  3':GGUUCCAAAACACCAUC-AGUUACCACAACCAGUGGGGUUC 5'

 -9.90 1 RIC-seq