Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866611:139866624:[+] chr22:19443208:19443221:[-] nonBSJ supported CDS

circRNA 5':UAUAUCUCCAGGUC 3'


            |||||||||||:


target  3':UUAUAGAGGUCCGA 5'

 -19.80 11 RIC-seq
chrX:139866611:139866658:[+] chr22:19443208:19443248:[-] nonBSJ supported CDS

circRNA 5':UAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCG 3'


            ||||||||||| ||| ||||| || |||:|:|


target  3':UUAUAGAGGUCC-GAACUAACCCCUC--CCCGACC--CG-AGAUGGG 5'

 -37.60 8 RIC-seq
chrX:139866612:139866658:[+] chr22:19443208:19443248:[-] nonBSJ supported CDS

circRNA 5': AUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCG 3'


            ||||||||||| ||| ||||| || |||:|:|


target  3':UUAUAGAGGUCC-GAACUAACCCCUC--CCCGACC--CG-AGAUGGG 5'

 -37.20 1 RIC-seq
chrX:139866613:139866658:[+] chr22:19443211:19443248:[-] nonBSJ supported CDS

circRNA 5':UAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCG 3'


            ||||||||| ||| ||||| || |||:|:|


target  3': UAGAGGUCC-GAACUAACCCCUC--CCCGACC--CG-AGAUGGG 5'

 -34.90 1 RIC-seq