Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866476:139866506:[+] chrX:43702932:43702963:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUA-CGU-CUUCCAGAA 3'


            ||:||:|| ||| ||| || |||||||||


target  3':GACGGAGGG-UGUG-CCAGGGCCCGAAGGUCUUG 5'

 -30.80 1 RIC-seq
chrX:139866477:139866530:[+] chrX:43702909:43702967:[-] nonBSJ supported CDS

circRNA 5':UGUCUU-CCAACAAAG-GUA----C-GUCUUCCAGAAAAUCCACGU-CUUCCAACCAAGCCA 3'


            |:||| || || ||| | |:||:||| | ||| || |||||| |:||


target  3': CGGAAUGGGAUUCUCACAUUCAGGACGGAGGGUGUGCCAGG-GCCCGAAGGUCUUGUUGG 5'

 -35.90 1 RIC-seq
chrX:139866477:139866548:[+] chrX:43702909:43702967:[-] nonBSJ supported CDS

circRNA 5':UGUCUU-CCAACAAAG-GUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCA 3'


            |:||| || || ||| |||:| |:||:||| || | ||||||||| ||


target  3': CGGAAUGGGAUUCUCACAUUCAGGA-------------CGGAGGGUGUGCCAGGGCCCGAAGGUCUUGUUGG 5'

 -42.20 11 RIC-seq
chrX:139866513:139866561:[+] chrX:43702909:43702963:[-] nonBSJ supported CDS

circRNA 5':CGUCUU-CCAACC------AAG-CCAUGUCUUCCAGAAAAUCCACGU-CUUCCAGAAA 3'


            |:||| || ||| || ||:||:||| | ||| || |||||||||


target  3': CGGAAUGGGAUUCUCACAUUCAGG-ACGGAGGGUGUGCCAGG-GCCCGAAGGUCUUG 5'

 -39.80 1 RIC-seq
chrX:139866521:139866561:[+] chrX:43702913:43702963:[-] nonBSJ supported CDS

circRNA 5':AACC----------AAG-CCAUGUCUUCCAGAAAAUCCACGU-CUUCCAGAAA 3'


            ||| ||| || ||:||:||| | ||| || |||||||||


target  3':AUGGGAUUCUCACAUUCAGG-ACGGAGGGUGUGCCAGG-GCCCGAAGGUCUUG 5'

 -37.00 1 RIC-seq
chrX:139866524:139866561:[+] chrX:43702926:43702963:[-] nonBSJ supported CDS

circRNA 5':CAAG-CCAUGUCUUCCAGAAAAUCCACGU-CUUCCAGAAA 3'


            ||| || ||:||:||| | ||| || |||||||||


target  3':AUUCAGG-ACGGAGGGUGUGCCAGG-GCCCGAAGGUCUUG 5'

 -36.70 1 RIC-seq