Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865902:139865928:[+] chr17:71537450:71537472:[-] nonBSJ supported Intron

circRNA 5':UCCGGAAAAAAUCCAGG-UCUUCCAGCC 3'


            ||:|| ||||| |||:|| ||


target  3':CGGUCUC-----GGUCCGAGAGGGACGA 5'

 -23.10 1 RIC-seq
chrX:139865996:139866037:[+] chr17:71572059:71572099:[-] nonBSJ supported Intron

circRNA 5':CAGUAACCUCCCAGUCUUCCAGAAAAUCCAC---GUCUU---CCCAAC 3'


            ||:|| |||| |||:|| ||||| |||| |||||


target  3':CUCGUU------UCAGUUGGUUUUA-AGGUGUGGCAGACGUCGGGUUA 5'

 -27.60 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:71572059:71572099:[-] target - chr17:71572099-71572100 T>C LAML-KR ICGC
chrX:139865902:139865928:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC