Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866774:139866814:[+] chr15:100153887:100153928:[+] nonBSJ supported Intron

circRNA 5':CAGUGUGCUGAUCUUCUGACAUUCAGGUCUU------CCAGUGUCUG 3'


            || || ||||:||:|| || ||||||: |||:| :||


target  3':UUCUCAAGACUGGAGGA--GUU--UCCAGAGGUAAAGGGUUAGGGA 5'

 -31.20 1 RIC-seq
chrX:139866774:139866818:[+] chr15:100153890:100153928:[+] nonBSJ supported Intron

circRNA 5':CAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCAAU 3'


            || || ||||:||:|| || ||||| |||| ||: ||||


target  3':UUCUCAAGACUGGAGGA--GUU--UCCAG-AGGUAA-AGG-GUUAG 5'

 -30.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866774:139866814:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866774:139866818:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC