Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866359:[+] chr3:50368067:50368096:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGG-UCUUCCAGGAAAUCCGUGUCUUCCA 3'


            ||||| | |||| ||| ||| |||: |||


target  3':AUGAAGAC-------GUCCUAGACCG-CCUC----CACG--AGG 5'

 -18.20 1 RIC-seq
chrX:139866316:139866359:[+] chr3:50368067:50368097:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGG-UCUUCCAGGAAAUCCGUGUCUUCCA 3'


            ||||| | |||| ||| ||| |||: |||


target  3':AUGAAGAC-------GUCCUAGACCG-CCUC----CACG--AGGA 5'

 -18.00 17 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC