Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865494:139865533:[+] chr10:1086117:1086156:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAAGAAGCUCCAAGUCUUC----CAGUAAAUCAAGUCUUC 3'


            ||||| || ||| :||| || ||| || |:|||


target  3':UAAGGUA-UUAGAG---UAGAUAAAUUGUAAUUGUGUCCGGAAA 5'

 -13.80 16 RIC-seq
chrX:139865497:139865516:[+] chr10:1086086:1086130:[-] nonBSJ supported 3UTR

circRNA 5':CCAAGAAGC------------------------UCCA-AGUCUUC 3'


            |||| :| |||| |:|||:


target  3':AGUUCCAUGUUAAAAAUUGUAAUUAUAUGUGUAAGGUAUUAGAGU 5'

 -9.90 1 RIC-seq
chrX:139865497:139865532:[+] chr10:1086086:1086134:[-] nonBSJ supported 3UTR

circRNA 5':CCAAGAAGCUCCAAGU--------------C-UUCCAGUAAAUCAAGUCUU 3'


            |||| :| | ||||| |||| :|||


target  3':AGUUCCAUGUUAAAAAUUGUAAUUAUAUGUGUAAGGUA--UUAGAGUAGAU 5'

 -11.10 1 RIC-seq
chrX:139866300:139866339:[+] chr10:1086117:1086155:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCCUCAAAUC-CAUAGCUUCCGAAAAAUC-CAGGUCUUC 3'


            |||| |||| ||| | ||||:|||


target  3':UAAGGUA--UUAGAGUAGAUAAAUUGUAAUUGUGUCCGGAA 5'

 -16.70 3 RIC-seq
chrX:139866300:139866339:[+] chr10:1086117:1086156:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCCUCAAAUC-CAUAGCUUCCGAAAAAUC-CAGGUCUUC 3'


            |||| |||| ||| | ||||:|||


target  3':UAAGGUA--UUAGAGUAGAUAAAUUGUAAUUGUGUCCGGAAA 5'

 -17.30 11 RIC-seq
chrX:139866310:139866339:[+] chr10:1086119:1086156:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAUAG-CUUCCGAAA--------AAUCCAGGUCUUC 3'


            ||||||: ||: ||: ||||:|||


target  3': AGGUAUUAGAGUAGAUAAAUUGUAAUUGUGUCCGGAAA 5'

 -16.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:1086086:1086130:[-] target - chr10:1086116-1086117 C>T LAML-KR ICGC
chr10:1086086:1086134:[-] target - chr10:1086116-1086117 C>T LAML-KR ICGC
chrX:139866300:139866339:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866310:139866339:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC