Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865726:139865779:[+] chr10:123238113:123238153:[-] nonBSJ supported 3UTR

circRNA 5':AGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAA 3'


            ||:|| |||||| ||||| || ||||| :||| |:|||||


target  3':CCAGGACGGUCUUA----AUCUACUU--UC-GUUAG----GGAA--UUUUUCUA 5'

 -23.10 12 RIC-seq
chrX:139865726:139865784:[+] chr10:123238113:123238143:[-] nonBSJ supported 3UTR

circRNA 5':AGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCA 3'


            ||:|| |||||| ||||| ||||| |||||


target  3':CCAGGACGGUCUUA----AUCUA------------------------CUUUCGUUAGGG 5'

 -22.60 1 RIC-seq
chrX:139865678:139865706:[+] chr10:123357712:123357739:[-] nonBSJ supported 5UTR

circRNA 5':CCAGAAAAAUCUGUGUCUUCCACCAAAUC 3'


            ||| || |:|||||||||:


target  3':AGUCCGAACCGCAAC-GGAGGUGGUUUGA 5'

 -21.80 1 RIC-seq
chrX:139865678:139865713:[+] chr10:123357712:123357746:[-] nonBSJ supported 5UTR

circRNA 5':CCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCU 3'


            ||| || |:|||||||||: ||


target  3':AGUCCGAACCGCAAC-GGAGGUGGUUUGAAACGAGC 5'

 -22.50 13 RIC-seq
chrX:139865695:139865713:[+] chr10:123357729:123357746:[-] nonBSJ supported 5UTR

circRNA 5':UUCCACCAAAUCCAAGUCU 3'


            |||||||||: ||


target  3': AGGUGGUUUGAAACGAGC 5'

 -15.10 8 RIC-seq
chrX:139865698:139865713:[+] chr10:123357732:123357746:[-] nonBSJ supported 5UTR

circRNA 5':CACCAAAUCCAAGUCU 3'


            ||||||: ||


target  3': UGGUUUGAAACGAGC 5'

 -7.40 1 RIC-seq