Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866127:139866181:[+] chr19:8032616:8032666:[-] nonBSJ supported CDS

circRNA 5':GGCCUCCAG-GUCUUCCAGACUAUCCAUGUCUU-CCAGAAAAUCCUUGUCUUCCCUU 3'


            ||||| | |:||| |||: |||| || || :|: :||||:


target  3':ACGGAGAAGAC-GGAGG-CUGGCAA--ACAGUUUGGCCUAUUU---GCGUUGGGGAGA 5'

 -31.80 3 RIC-seq
chrX:139866127:139866181:[+] chr19:8032617:8032666:[-] nonBSJ supported CDS

circRNA 5':GGCCUCCAG-GUCUUCCAGACUAUCCAUGUCUU-CCAGAAAAUCCUUGUCUUCCCUU 3'


            ||||| | |:||| |||: |||| || || :|: :||||:


target  3': CGGAGAAGAC-GGAGG-CUGGCAA--ACAGUUUGGCCUAUUU---GCGUUGGGGAGA 5'

 -30.40 1 RIC-seq