Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865897:139865959:[+] chr1:43167704:43167756:[+] nonBSJ supported 3UTR

circRNA 5':CAUCU--UC--CGGAAAAAAUCCAGGU-CUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUC 3'


            |||| || ||| |||| ||:|: ||| || |||||| || |||| :||||


target  3':AUAGACCAGUUGCCCGUUUUUCGUUCGUGAA----------AUCCAGAAG----UCGAGGU-UAGAAA 5'

 -25.00 1 RIC-seq
chrX:139865903:139865959:[+] chr1:43167704:43167746:[+] nonBSJ supported 3UTR

circRNA 5':CCGGAAAAAAUCCAGGU-CUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUC 3'


            ||| |||| ||:|: ||| || |||||| || |||| :||||


target  3':UGCCCGUUUUUCGUUCGUGAA----------AUCCAGAAG----UCGAGGU-UAGAAA 5'

 -24.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865897:139865959:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC