Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865472:139865480:[+] chr10:105785565:105785573:[+] nonBSJ supported 3UTR

circRNA 5':AUGUCUUCC 3'


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target  3':AACAGAAGU 5'

 -9.10 22 RIC-seq
chrX:139866119:139866146:[+] chr10:105761953:105761985:[+] nonBSJ supported CDS

circRNA 5': CUUCCAA--UGGCCUCC---AGGUCUUCCAGAC 3'


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target  3':AGAAGUCUCGACCGCUAUGAUUCCAGUCU-UCUA 5'

 -14.70 12 RIC-seq
chrX:139866226:139866267:[+] chr10:105778635:105778665:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCA--GC--AAGUCCACGUCUUCCAACAAAGCC-AUGUCUUC 3'


            |||: || |||| ||| |||||||


target  3':AAGAGCACCGCGAAUUCA----------------UCGACUACAGAAA 5'

 -11.20 1 RIC-seq
chrX:139866226:139866267:[+] chr10:105778635:105778668:[+] nonBSJ supported CDS

circRNA 5':GUCUUC-CA--GC----AAGUCCACGUCUUCCAACAAAGCC-AUGUCUUC 3'


            ||||| | || |||| ||| |||||||


target  3':UGGAAGAGCACCGCGAAUUCA----------------UCGACUACAGAAA 5'

 -11.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:105761953:105761985:[+] target - chr10:105761976-105761977 G>T LICA-CN ICGC