Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866380:139866416:[+] chr1:16266393:16266432:[+] nonBSJ supported 3UTR

circRNA 5': AAAGCC-AUGUC---UUCCAUCAAAUUAAUGUCUUCCAGCC 3'


            |||:|| ||| |||| ::|| |||| ||||


target  3':UUUUUGGUUACUUUACAAGGAACUGGGGUUCCAGA--GUCGU 5'

 -18.40 2 RIC-seq
chrX:139865780:139865797:[+] chr1:16255994:16256026:[+] nonBSJ supported CDS

circRNA 5':AUCCAGG---------------UCUUCCAGUCA 3'


            |||| : |||:||||||


target  3':AAGGUGUCUAAGUGGACGAUCAAGAGGGUCAGA 5'

 -19.20 2 RIC-seq
chrX:139865782:139865850:[+] chr1:16256817:16256895:[+] nonBSJ supported CDS

circRNA 5':CCAG-GUCUUCCAGUCA--AUCAGU--GU-CUUCCAGAAAGAAAUCCAGGUCUUCCAG-UCA-GU-CAG---------------UGUCUUCCA 3'


            || :||||| |||| ||||| |: |:|| |||||| ||||| || || ||| |:|||: |


target  3':AGUGGUAGAAG--CAGUCUUAGUCUUCCGUGGAGU----------GGUCCA--AGGUCUAGAGCAUGUCUGGAAAAAGCUUCCGAUAGAGAGA 5'

 -37.60 1 RIC-seq
chrX:139865798:139865848:[+] chr1:16256835:16256896:[+] nonBSJ supported CDS

circRNA 5':AUCAGUGUCUUC--CAGAA--AGAAAU-------CCAGGUCUUCCAG-UCA-GU-CAGUGUCUUC 3'


            ||| ::||||| ||||| |||| |||||| ||||| || || ||| :|||


target  3':AAGUGGUAGAAGCAGUCUUAGUCUUCCGUGGAGUGGUCCA--AGGUCUAGAGCAUGUCU-GGAAA 5'

 -37.20 1 RIC-seq
chrX:139865840:139865885:[+] chr1:16262647:16262668:[+] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGU-CUUC 3'


            ||||| || || ||| ||:


target  3':CUACAGC-GGCAU-----------------------GG-CCAUGAGA 5'

 -8.70 2 RIC-seq
chrX:139866729:139866750:[+] chr1:16254978:16255000:[+] nonBSJ supported CDS

circRNA 5':CAGUCUUCCAUCAAC-UGGCUCA 3'


            ||:||:| ||| | :|||


target  3':UUCGGAGGAGAGUCUUAGUGAGC 5'

 -16.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:16255994:16256026:[+] target - chr1:16256007-16256008 T>C LAML-KR ICGC
chr1:16256817:16256895:[+] target - chr1:16256841-16256842 C>T BTCA-JP ICGC
chr1:16256835:16256896:[+] target - chr1:16256841-16256842 C>T BTCA-JP ICGC
chr1:16266393:16266432:[+] target - chr1:16266428-16266429 T>- PACA-CA ICGC