Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866618:139866645:[+] chr16:75646615:75646651:[-] nonBSJ supported CDS

circRNA 5':CCA-GGUCUUC-CAG-------CAUCUCCAGG-GCUUC 3'


            || ||||||| || ||| |||||| ||||


target  3':AGUCCCAGAAGUGUAAAAGAAAGUAAAGGUCCUCGAA 5'

 -26.60 10 RIC-seq
chrX:139866618:139866664:[+] chr16:75646615:75646671:[-] nonBSJ supported CDS

circRNA 5':CCA-GGUCUUC-CAG-------CAUCUCCAGG-GCUUCCAGCAU-CUGCUCGUCUUCC 3'


            || ||||||| || ||| |||||| |||||||| ||:|| | ||||


target  3':AGUCCCAGAAGUGUAAAAGAAAGUAAAGGUCCUCGAAGGUCCAAUGAUGACC-GAAGA 5'

 -47.30 8 RIC-seq
chrX:139866619:139866645:[+] chr16:75646615:75646651:[-] nonBSJ supported CDS

circRNA 5': CA-GGUCUUC-CAG-------CAUCUCCAGG-GCUUC 3'


            || ||||||| || ||| |||||| ||||


target  3':AGUCCCAGAAGUGUAAAAGAAAGUAAAGGUCCUCGAA 5'

 -26.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr16:75646615:75646651:[-] target - chr16:75646639-75646640 T>A BTCA-JP ICGC
chr16:75646615:75646671:[-] target - chr16:75646639-75646640 T>A BTCA-JP ICGC