Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865552:139865575:[+] chr13:98652839:98652861:[+] nonBSJ supported CDS

circRNA 5':AGCAAUUACUGGUCUUCCACCAAA 3'


            ||| || :|: |||||||||


target  3':CCGUCU-UGCUCGAAAGGUGGUUC 5'

 -20.10 19 RIC-seq
chrX:139865666:139865694:[+] chr13:98667784:98667809:[+] nonBSJ supported CDS

circRNA 5':AAUCCAUGUCUUCCAGAAAAAUCUGUGUC 3'


            ||||| |||:||| || :||:


target  3':GUAGGU--AGAGGGUAAUGA-AGUUACGU 5'

 -18.00 25 RIC-seq
chrX:139866204:139866238:[+] chr13:98642744:98642773:[+] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAG 3'


            |::|||| :|||| || |||||


target  3': GUUCAGACG---UUUUACAAACUUGUC-UCGUUG 5'

 -11.80 1 RIC-seq
chrX:139866204:139866238:[+] chr13:98642744:98642774:[+] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAG 3'


            |::|||| :|||| || |||||


target  3':CGUUCAGACG---UUUUACAAACUUGUC-UCGUUG 5'

 -12.20 37 RIC-seq
chrX:139866232:139866241:[+] chr13:98642767:98642776:[+] nonBSJ supported CDS

circRNA 5':CAGCAAGUCC 3'


            ||||||||


target  3':AUCGUUCAGA 5'

 -12.40 1 RIC-seq