Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865432:139865463:[+] chr20:52560653:52560680:[-] nonBSJ supported 3UTR

circRNA 5':AUCCUGAGCUUCCAGAAAAUCCACAUCUUCCA 3'


            |||| ||| :|||||: ||||


target  3':AAGGAAA--AAGAUAUG--GGGUGUGUAAGGC 5'

 -18.90 16 RIC-seq
chrX:139865992:139866015:[+] chr20:52553895:52553920:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCAG-UAA-CCUCCCAGUCUUCC 3'


            ||| || ||| || ||||:| |


target  3':AAAGAUCUAUUCGGUCGGUCGGUUGA 5'

 -15.70 34 RIC-seq
chrX:139866255:139866276:[+] chr20:52561228:52561257:[-] nonBSJ supported 3UTR

circRNA 5':AAGCCA------UGUCUU-CCAGACUAUC 3'


            | ||| || |:| | |:||:|||


target  3':CUGGGUUGAUCCACUGGACGAUUUGGUAGA 5'

 -11.20 14 RIC-seq
chrX:139866621:139866657:[+] chr20:52609138:52609178:[-] nonBSJ supported CDS

circRNA 5':GGUCUU----CCAGCAUCUCCAGGGCUUCCAGCAUCUGCUC 3'


            ||||| ||||| |||| :| || ||||||


target  3':ACAGAAGACUGGUCGAACAGGUAGUGUCUGUGAAAGACGAA 5'

 -28.40 18 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr20:52609138:52609178:[-] target - chr20:52609152-52609153 C>G BTCA-JP ICGC