Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866215:139866250:[+] chr19:56206174:56206216:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAA----------GUCCACGUCUUCC 3'


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target  3':CCCUCAAC-CACACCGA--CGUCCACCCCCCGACGGGUGUCGGAGU 5'

 -17.80 1 RIC-seq
chrX:139866215:139866261:[+] chr19:56206169:56206216:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAA----------GUCCACGUCUUCCAACAAAGCCAU 3'


            ||| |||| ||| |:||||: |:|| |||||


target  3':CCCUCAAC-CACACCGA--CGUCCACCCCCCGACGGGUGUCGGAG------UCGGUC 5'

 -23.30 11 RIC-seq