Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865614:139865639:[+] chr19:48202592:48202620:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAUAAUUUCAA--GGUC 3'


            | | ||:||| || ||||


target  3':AGAAGAGGAGGACUUACUUGUAAGCCAGC 5'

 -12.60 1 RIC-seq
chrX:139865614:139865661:[+] chr19:48202576:48202620:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAUAAUUUCAA--GGUCUUCCAUCAAAUACAGAUCUUCC 3'


            | | ||:||| || |||| |||| ||| ||||:|


target  3':AGAAGAGGAGGACUUACUUGUAAGCCAGC---UAGUA-AUGG-UAGAGGC 5'

 -20.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:48202576:48202620:[+] target 1700051 chr19:48202596-48202597 C>T Coffin-Siris_syndrome_12 ClinVar
chr19:48202592:48202620:[+] target 1700051 chr19:48202596-48202597 C>T Coffin-Siris_syndrome_12 ClinVar
chr19:48202576:48202620:[+] target - chr19:48202599-48202600 A>G BTCA-JP ICGC
chr19:48202592:48202620:[+] target - chr19:48202599-48202600 A>G BTCA-JP ICGC