Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865452:139865508:[+] chr4:156723530:156723579:[+] nonBSJ supported CDS

circRNA 5':CCACAUCUUCCAGACAAUCCAUGUCUUC---CGGACAAUCCAUGUCUU---CCAAGAAGCUCC 3'


            ||||| |||:|||| |:| || |:| ||| || |||||


target  3':AGUGUAACA----------GUAUAGAAAACCGUCCGUGACCUGC-GAACACGGCG--UCGAGU 5'

 -19.80 2 RIC-seq
chrX:139865452:139865520:[+] chr4:156723519:156723579:[+] nonBSJ supported CDS

circRNA 5':CCACAUCUUCCAGACAAUCCAUGUCUUC---CGGACAAUCCAUGUCUU---CCAAGAAGCUCCAAGUCUUCCAGU 3'


            ||||| |||:|||| |:| || |:| ||| || ||||| |||


target  3':AGUGUAACA----------GUAUAGAAAACCGUCCGUGACCUGC-GAACACGGCG--UCGAGUAACCGUU-GUCU 5'

 -20.20 23 RIC-seq