Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865761:139865792:[+] chr8:20106333:20106372:[-] nonBSJ supported 3UTR

circRNA 5': CAGUGUCU---UCCAGAA----AGAAAUCCAGGUCUUCC 3'


            |||: ||| :|||| ||| ||| ||:||


target  3':GGUCGGAGACCGGGGUCGACCUGUCUACCCCUCC-GAGGGA 5'

 -24.30 1 RIC-seq
chrX:139865800:139865831:[+] chr8:20106333:20106372:[-] nonBSJ supported 3UTR

circRNA 5': CAGUGUCU---UCCAGAA----AGAAAUCCAGGUCUUCC 3'


            |||: ||| :|||| ||| ||| ||:||


target  3':GGUCGGAGACCGGGGUCGACCUGUCUACCCCUCC-GAGGGA 5'

 -24.30 1 RIC-seq
chrX:139865800:139865868:[+] chr8:20106333:20106399:[-] nonBSJ supported 3UTR

circRNA 5': CAGUGUCU---UCCAGAA----AGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCC 3'


            |||: ||| :|||| ||| ||| ||:|| || |||:|| |||| |:||::|:||


target  3':GGUCGGAGACCGGGGUCGACCUGUCUACCCCUCC-GAGGGAC--UCC--CACGGAC---CUUUC--GGUGUGGGAGA 5'

 -40.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:20106333:20106399:[-] target - chr8:20106380-20106381 C>A LAML-KR|LICA-CN ICGC