Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866576:139866593:[+]	chr12:25101913:25101930:[-]	nonBSJ supported	5UTR	circRNA 5':ACUAAGCUACGUCUUCCA 3' \|:\|\|\| \|\|\| :\|\| target 3':GGGUUCCCAGCAUCGGGG 5'	-9.60	2	RIC-seq
chrX:139865935:139865995:[+]	chr12:25097792:25097848:[-]	nonBSJ supported	Intron	circRNA 5':UGUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCA--GAAAAUCCAUGUCUUC 3' \|\|\|\|\|\|\|: \|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|: target 3':CCAGAAGGGACAA-AGGUA-AGAAGGUAAA--AGG-ACAUAAAAACCCUGUAUUG-ACAGAGA 5'	-35.30	1	RIC-seq
chrX:139865953:139865988:[+]	chr12:25097792:25097822:[-]	nonBSJ supported	Intron	circRNA 5':CGUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCA 3' \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\| target 3':CCAGAAGGGACAA-AGGUA-AGAAGGUAAA--AGG 5'	-29.90	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866576:139866593:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC