Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865935:139865980:[+] chr5:96500779:96500838:[-] nonBSJ supported CDS

circRNA 5':UGU-CUUCCUGAAGAUCCACGUCUUCCAGAAAAUC----------------CAUGUCUUCCAG 3'


            |: || |||||||| || |||| || |||: ||:|||


target  3':UCGUGACGGACUUCUUCACUAUGA--GUCUCA-AGAACAAGAUAUGACUAAGUAUCGAGGGUG 5'

 -23.10 1 RIC-seq
chrX:139865935:139865998:[+] chr5:96500779:96500838:[-] nonBSJ supported CDS

circRNA 5':UGU-CUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAG 3'


            |: || |||||||| || |||| || ||| |||: ||:|||


target  3':UCGUGACGGACUUCUUCACUAUGA--GUCUCA-AGAACAAGAUAUGACUAA--GUAUCGAGGGUG 5'

 -26.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:96500779:96500838:[-] target - chr5:96500799-96500800 T>C LINC-JP ICGC