5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865801:139865854:[+] | chr3:127789650:127789695:[+] | nonBSJ supported | 3UTR |
circRNA 5':AGUG-UCUUCCAGAAAGAAAUCCAGGUCUU---CCAGUCAGUCAGUGUCUUCCAGAAA 3' ||| || || |||||| |:| ||| :| |||||:: | ||||| target 3':CCACGAGUAG----------AGGUCCUGGAUCCGGU-GGACAGUCGU-GUUUGUCUUG 5' |
-30.70 | 1 | RIC-seq |
| chrX:139866603:139866643:[+] | chr3:127788489:127788534:[+] | nonBSJ supported | 3UTR |
circRNA 5':UGUCUUCCUAUAUC--UCCAGGUCUU---C-CAGCAUCUCCAGGGCU 3' | |||||| |:| ||| || | ||| ||||||: target 3':UC-GAAGGAGUUGGACAGGCCCUCUGCCCGAGUCUUCUC-GUCCCGGG 5' |
-27.50 | 2 | RIC-seq |
| chrX:139866605:139866643:[+] | chr3:127788489:127788560:[+] | nonBSJ supported | 3UTR |
circRNA 5':UCUUCCUAUAUCUCC-AGGU-CUUC-----CAGCA-UCUC-----------------------------CAGGGCU 3' ||:||: ||| |||: |||| |||| :||| ||||||: target 3': GAGGGGA----AGGCUCCGCGAAGACCUCGUCGAAGGAGUUGGACAGGCCCUCUGCCCGAGUCUUCUCGUCCCGGG 5' |
-32.30 | 1 | RIC-seq |
| chrX:139866040:139866089:[+] | chr3:127779464:127779506:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAA-GUCUUCCG-GAUAAUU-UGGGUCUUCCUGAAAAUCUACGUCUUCCAA 3' || |:| ||:| |||| ||||| |:|||||| target 3':UGGAGCCGGUCACAACUGUCAUCACCCC----GACUUA------CGGAAGGUA 5' |
-21.10 | 2 | RIC-seq |