Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866674:139866715:[+] chr10:5855176:5855207:[-] nonBSJ supported 5UTR

circRNA 5':ACGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCU 3'


            |||| || |||: ||||||: |||:|||


target  3':GGCAGUC---CGGC----CACG---GGUCGUGCUAGUGCAGC 5'

 -29.80 47 RIC-seq
chrX:139866674:139866715:[+] chr10:5855177:5855207:[-] nonBSJ supported 5UTR

circRNA 5':ACGUCUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCU 3'


            |||| || |||: ||||||: |||:|||


target  3': GCAGUC---CGGC----CACG---GGUCGUGCUAGUGCAGC 5'

 -28.70 1 RIC-seq
chrX:139866684:139866715:[+] chr10:5855179:5855207:[-] nonBSJ supported 5UTR

circRNA 5':GCAUCUCUGUGUCUUCCAGCAUCUUCAUGUCU 3'


            || :| |||: ||||||: |||:|||


target  3':AGUCCGGCCACG---GGUCGUGCUAGUGCAGC 5'

 -26.50 1 RIC-seq
chrX:139865521:139865552:[+] chr10:5838747:5838781:[-] nonBSJ supported CDS

circRNA 5':AAAUCAAGUC----UUCCAG-CAAAUCCAGUCUUCCA 3'


            ||||||||| |||||| | ||| |||:||


target  3':CUUAGUUCAGUUGUAAGGUCAGAGAAGG--AGAGGGG 5'

 -28.20 5 RIC-seq
chrX:139865521:139865564:[+] chr10:5838747:5838792:[-] nonBSJ supported CDS

circRNA 5':AAAUCAAGUC----UUCCAG-CAAAUCCAGUCUUCCAGCAAUUACU-GGU 3'


            ||||||||| |||||| | ||| |||:|| ||| ||


target  3':CUUAGUUCAGUUGUAAGGUCAGAGAAGG--AGAGGGGUAAC--UGAGCCC 5'

 -29.90 6 RIC-seq