Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866191:139866223:[+] chr9:125618120:125618152:[-] nonBSJ supported CDS

circRNA 5':GCUUCCAAAAAAUCCGGGUCUUC-CAGGAAAUCC 3'


            |||| |||| | |: | || : ||


target  3':AGAAGAAG-UUUAAAACAUGGUGAGUGUGAGAGA 5'

 -8.20 1 RIC-seq
chrX:139866207:139866249:[+] chr9:125618119:125618152:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUC-CACGUCUUC 3'


            |||||| |||| ||| ||| | || ||| |||:


target  3': UAGAAGAAG-UUUAAA-ACAU--GGU-G---AGUGUG-AGAGA 5'

 -13.40 29 RIC-seq
chrX:139866333:139866375:[+] chr9:125618119:125618152:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUC-CACGUCUUC 3'


            |||||| |||| ||| ||| | || ||| |||:


target  3': UAGAAGAAG-UUUAAA-ACAU--GGU-G---AGUGUG-AGAGA 5'

 -13.40 2 RIC-seq