Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865435:139865463:[+] chr5:32404151:32404182:[-] nonBSJ supported CDS

circRNA 5':CUG-AGCUUCCAGAAAAUCCACA-UCU-UCCA 3'


            || |||||| ||| |||


target  3':UACGUCGAAGAAAAAAAAAUACAAAGACAGGA 5'

 -11.70 10 RIC-seq
chrX:139865462:139865467:[+] chr5:32403334:32403339:[-] nonBSJ supported CDS

circRNA 5':CAGACA 3'


            ||||


target  3':UUCUGC 5'

 -4.20 1 RIC-seq
chrX:139865704:139865720:[+] chr5:32388703:32388715:[-] nonBSJ supported CDS

circRNA 5':AUCCAAGUCUUCCAGUA 3'


            ||| |||| ||||


target  3':GAGG---AGAA-GUCAA 5'

 -9.10 9 RIC-seq
chrX:139865741:139865753:[+] chr5:32388703:32388712:[-] nonBSJ supported CDS

circRNA 5':AUCUAGAUCUUCC 3'


            ||: |||||


target  3':GAGG---AGAAGU 5'

 -5.10 1 RIC-seq
chrX:139865828:139865866:[+] chr5:32390517:32390546:[-] nonBSJ supported CDS

circRNA 5':UUCCAGUCAGUCAGUGUCUUC--CAGAAAAAUCUACGUCUU 3'


            |||||| :||||:|| || ||||||


target  3':GAGGUCAUG----UACAGGAGAAGUAU-------UGCAGAC 5'

 -21.90 19 RIC-seq