Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865950:139865994:[+] chr2:20512119:20512160:[-] nonBSJ supported CDS

circRNA 5':CCACGUCUUCCA-GAAAAUCCAUGUCUUCCAGAAAAUCCAUGU-CUU 3'


            ||| ||||| |||||:|| || |||||| || ||| |:


target  3': GUGACAAAGGUACUUUUGGG-AC---AGGUCUAGAAGAGACAUGGU 5'

 -29.40 1 RIC-seq
chrX:139865950:139865997:[+] chr2:20512119:20512161:[-] nonBSJ supported CDS

circRNA 5':CCACGUCUUCCA-GAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||| ||||| |||||:|| || |||||| || ||| |||


target  3': GUGACAAAGGUACUUUUGGG-AC---AGGUCUAGAAGAGACAU--GGUA 5'

 -30.90 1 RIC-seq
chrX:139866125:139866194:[+] chr2:20478443:20478501:[-] nonBSJ supported CDS

circRNA 5':AUGGCCUCCAGGUC--UUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCUU 3'


            ||| ||| |:||||||||| ||| ||||| |||:|:| ||| |||


target  3':AACCUCUCCUCCUUUUAGGGUCUGAUA---ACA-------UUUUACCAACGGGAUACCCAC--GAUC-CGAC 5'

 -26.40 1 RIC-seq