Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865468:139865509:[+] chr1:10357084:10357130:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUC---CGGA-CAA-UCCAUGUC-UUCCAAGAAGCUCCA 3'


            ||||| |||| |: ||| ||| ||| |||| |||||||||


target  3':GAGGUAGAGAACAAAGUAUAGUUAAGGAACAAAAAGG-UCUUCGAGGG 5'

 -36.30 25 RIC-seq
chrX:139865469:139865509:[+] chr1:10357085:10357128:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUC---CGGA-CAA-UCCAUGUC-UUCCAAGAAGCUCCA 3'


            |||| |||| |: ||| ||| ||| |||| |||||||||


target  3': GGUAGAGAACAAAGUAUAGUUAAGGAACAAAAAGG-UCUUCGAGG 5'

 -34.00 1 RIC-seq
chrX:139865530:139865557:[+] chr1:10318647:10318675:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGCAAAUCCAGUCU-UCCA---GCAAU 3'


            |||||||| ||||||| :||| ||||


target  3':AAAGGUCGU---GGUCAGACGGGUAUCCGUUU 5'

 -30.60 3 RIC-seq
chrX:139865804:139865835:[+] chr1:10384007:10384035:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUC 3'


            |||:|| || |||| ||| ||||


target  3':ACAGGAGUACUCAAAAAAGGU--AGA--GUCAC 5'

 -16.00 17 RIC-seq
chrX:139865804:139865840:[+] chr1:10383963:10384019:[+] nonBSJ supported CDS

circRNA 5':GUCU-UC-CAGA---AAGAAAUCCAGGUCUUCCA--------------GUCAGUCA 3'


            ||: || ||| ||| ||| |||| ||||||||


target  3':AAGGUAGAGUCACCCUUCAUUAAGUCCUCCGUUUCCCCUCAUGUCACACAGUCAGUC 5'

 -18.30 1 RIC-seq
chrX:139865805:139865840:[+] chr1:10383963:10384019:[+] nonBSJ supported CDS

circRNA 5': UCU-UC-CAGA---AAGAAAUCCAGGUCUUCCA--------------GUCAGUCA 3'


            ||: || ||| ||| ||| |||| ||||||||


target  3':AAGGUAGAGUCACCCUUCAUUAAGUCCUCCGUUUCCCCUCAUGUCACACAGUCAGUC 5'

 -18.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:10318647:10318675:[+] target 4658 chr1:10318660-10318661 A>T Charcot-Marie-Tooth_disease_type_2A1 ClinVar
chr1:10318647:10318675:[+] target - chr1:10318652-10318653 C>G LAML-KR|LICA-CN ICGC
chr1:10383963:10384019:[+] target - chr1:10383989-10383990 G>T LICA-CN ICGC