Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865983:139866008:[+] chr1:235346047:235346069:[-] nonBSJ supported CDS

circRNA 5':AAUCCAUGUCUUCCAGUAACCUCCCA 3'


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target  3': UAGGUACAGAAC-UCG-UGGAGAGA 5'

 -24.70 1 RIC-seq
chrX:139866654:139866668:[+] chr1:235394484:235394498:[-] nonBSJ supported CDS

circRNA 5':GCUCGUCUUCCAACA 3'


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target  3':AGAAAAGAACCUUGA 5'

 -4.70 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:235394484:235394498:[-] target - chr1:235394485-235394486 C>T LICA-CN ICGC