Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865990:139866000:[+] chr3:183027513:183027523:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGUA 3'


            ||:||||||


target  3':AAGGAGGUCAA 5'

 -13.90 8 RIC-seq
chrX:139866773:139866815:[+] chr3:183097098:183097133:[-] nonBSJ supported CDS

circRNA 5':CCAGUGUGCUGAUCUUCUGACAUUCAGG---UCUUCCAGUGUCUGC 3'


            ||| ||: | || ||||||||||| ||||| :||||


target  3':AGUC-CAU--CCAGU--ACUGUAAGUCCUUCAGAAG----UAGAC 5'

 -28.30 19 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866773:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC