Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866127:139866162:[+] chr11:11986081:11986124:[-] nonBSJ supported CDS

circRNA 5': GGC----CUCCAGGUCUUCCAGA--CUAUC-CAUGUCUUCCAG 3'


            ||| |||||||||:||||| || | ||: ||:||||


target  3':UCCGAGGAGAGGUCCAGGAGGUCGAGGACCGCGUGGAGGAGGUA 5'

 -47.50 1 RIC-seq
chrX:139866127:139866164:[+] chr11:11986081:11986126:[-] nonBSJ supported CDS

circRNA 5': GGC----CUCCAGGUCUUCCAGA--CUAUC-CAUGUCUUCCA-GAA 3'


            ||| |||||||||:||||| || | ||: ||:|||| ||


target  3':UCCGAGGAGAGGUCCAGGAGGUCGAGGACCGCGUGGAGGAGGUACU 5'

 -48.20 23 RIC-seq
chrX:139866129:139866164:[+] chr11:11986088:11986126:[-] nonBSJ supported CDS

circRNA 5':CCUCCAGGUCUUCCAGA--CUAUC-CAUGUCUUCCA-GAA 3'


            |||||||||:||||| || | ||: ||:|||| ||


target  3':AGAGGUCCAGGAGGUCGAGGACCGCGUGGAGGAGGUACU 5'

 -45.40 21 RIC-seq
chrX:139866130:139866164:[+] chr11:11986088:11986126:[-] nonBSJ supported CDS

circRNA 5': CUCCAGGUCUUCCAGA--CUAUC-CAUGUCUUCCA-GAA 3'


            |||||||||:||||| || | ||: ||:|||| ||


target  3':AGAGGUCCAGGAGGUCGAGGACCGCGUGGAGGAGGUACU 5'

 -45.00 2 RIC-seq
chrX:139866191:139866216:[+] chr11:11986082:11986104:[-] nonBSJ supported CDS

circRNA 5': GCUUCCAAAAAAUCCGGGUCUUCCAG 3'


            |||:| |||:||||:|||||


target  3':CCGAGGAG-----AGGUCCAGGAGGUCG 5'

 -29.80 1 RIC-seq
chrX:139866630:139866656:[+] chr11:11986115:11986143:[-] nonBSJ supported CDS

circRNA 5':GCAUCUCCA--GGGCUUCCAGCAUC-UGCU 3'


            | :||||| ::||| |||:| || |:|


target  3':GGAGGAGGUACUUCGACGGUUGAAGUAUG 5'

 -23.90 1 RIC-seq
chrX:139866630:139866657:[+] chr11:11986115:11986144:[-] nonBSJ supported CDS

circRNA 5':GCAUCUCCA--GGGCUUCCAGCAUC-UGCUC 3'


            | :||||| ::||| |||:| || |:||


target  3':GGAGGAGGUACUUCGACGGUUGAAGUAUGA 5'

 -24.40 27 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:11986081:11986124:[-] target 1255592 chr11:11986112-11986113 G>A Autosomal_dominant_polycystic_liver_disease ClinVar
chr11:11986081:11986126:[-] target 1255592 chr11:11986112-11986113 G>A Autosomal_dominant_polycystic_liver_disease ClinVar
chr11:11986088:11986126:[-] target 1255592 chr11:11986112-11986113 G>A Autosomal_dominant_polycystic_liver_disease ClinVar