Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865488:139865533:[+] chr11:12023866:12023910:[-] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAA-GUCUUC 3'


            |||| ||||| :|||| || ||||:


target  3':UGUACCUACCAUAAUAA-AGGUU-GGAAGCACAGACACAACCAGAGU 5'

 -16.00 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:12023866:12023910:[-] target - chr11:12023884-12023885 C>G PACA-CA ICGC