Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866784:139866814:[+] chr18:55916129:55916157:[+] nonBSJ supported 5UTR

circRNA 5':AUCUUC-UGACAUUCAGGUCUUCCAGUGUCUG 3'


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target  3':AAGAAGUAAGGUAAAACCC-AA-GUCACAGA 5'

 -21.00 2 RIC-seq
chrX:139866203:139866220:[+] chr18:56016788:56016805:[+] nonBSJ supported CDS

circRNA 5':UCCGGGUCUUCCA-GGAAA 3'


            ||| :| ||||


target  3':UGGCGUAUACAUGACCUU 5'

 -7.90 1 RIC-seq
chrX:139866673:139866703:[+] chr18:56035051:56035077:[+] nonBSJ supported CDS

circRNA 5':CACGUCUU--CCAGCAUCUCUGUGUCUUCCAGC 3'


            ||| |: |||||| |||| ||||:


target  3':AUGCCGGUCUGGUCGUUGAGA------AGGUUA 5'

 -21.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866784:139866814:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC