Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866328:139866378:[+] chr6:157527458:157527501:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAA 3'


            || ||| || || |::|||||| ||| | |:|||


target  3':GAGCAGCAGUAGUUAUGUAAGUCGUAGAAGG------AGGAGAA-AGGGUC 5'

 -23.20 1 RIC-seq
chrX:139866329:139866377:[+] chr6:157527460:157527502:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUC--CAGGAAA-UCCGUGUCUUCCAGCAAAUCCACGUC-UUCCA 3'


            || ||| || ||: || |::|||||| ||| || ||||


target  3': GGAGCAGCAGUAGUUAUGUAAGUCGUAGAAGG------AGG---AGAAAGGG 5'

 -24.30 1 RIC-seq
chrX:139866329:139866378:[+] chr6:157527458:157527502:[+] nonBSJ supported CDS

circRNA 5':UCCAGGUCUUC--CAGGAAA-UCCGUGUCUUCCAGCAAAUCCACGUCUUCCAA 3'


            || ||| || ||: || |::|||||| ||| | |:|||


target  3': GGAGCAGCAGUAGUUAUGUAAGUCGUAGAAGG------AGGAGAA-AGGGUC 5'

 -24.90 19 RIC-seq