Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866051:139866077:[+] chr1:12337583:12337612:[+] nonBSJ supported CDS

circRNA 5':CGGAUAA---UUUGGGUCUUCCU-GAAAAUC 3'


            || ||| :|: ||| ||||||


target  3':ACCGACGCGAAAAGUCGUAUGGAGCUUUUA 5'

 -10.90 19 RIC-seq
chrX:139866051:139866113:[+] chr1:12337583:12337624:[+] nonBSJ supported CDS

circRNA 5':CGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUCCAGAAAAUC 3'


            || ||||| ||| || ||| || |||: |:|| ||||||


target  3':ACCACUGAAACCACC---GAC--------GC-GAAAAG----UC-GUAU-GGAG--CUUUUA 5'

 -14.60 22 RIC-seq
chrX:139866057:139866077:[+] chr1:12337583:12337603:[+] nonBSJ supported CDS

circRNA 5':AUUUGGGUCUUCCU-GAAAAUC 3'


            ||| :|: ||| ||||||


target  3':AAAAGUCGUAUGGAGCUUUUA 5'

 -10.70 1 RIC-seq
chrX:139866092:139866113:[+] chr1:12337583:12337599:[+] nonBSJ supported CDS

circRNA 5':AAGCCAUGUCUUCCAGAAAAUC 3'


            || |||: |:|| ||||||


target  3':GUC-GUAU-GGAG--CUUUUA 5'

 -9.20 1 RIC-seq
chrX:139866125:139866151:[+] chr1:12337590:12337613:[+] nonBSJ supported CDS

circRNA 5':AUGGCCUCCAGGUCUUCCAGACUAUCC 3'


            |||| |: || ||| ||:|


target  3':CACCGACG---CGAAAAGUCGUAUGGA 5'

 -10.20 2 RIC-seq
chrX:139866254:139866271:[+] chr1:12336685:12336710:[+] nonBSJ supported CDS

circRNA 5':AAAGCCAU------GUCUUC--CAGA 3'


            ||||||| ||| |||


target  3':CUUCGGUAGUUUUCCAGUUUUAGUCG 5'

 -11.30 2 RIC-seq
chrX:139866304:139866343:[+] chr1:12336685:12336725:[+] nonBSJ supported CDS

circRNA 5':CCUCAAAUCCAU------AGCUUCCGAAAAAUCCAGGUCUUC--CAGG 3'


            ||||| |||: |:|| ||||| |||


target  3': GAGUUCAAGAAUACACUUCGGUAGUUU------UCCAGUUUUAGUCG 5'

 -13.50 1 RIC-seq
chrX:139866304:139866343:[+] chr1:12336686:12336725:[+] nonBSJ supported CDS

circRNA 5':CCUCAAAUCCAU------AGCUUCCGAAAAAUCCAGGUCUUC--CAGG 3'


            ||||| |||: |:|| ||||| |||


target  3': GAGUUCAAGAAUACACUUCGGUAGUUU------UCCAGUUUUAGUC 5'

 -13.40 2 RIC-seq
chrX:139866304:139866352:[+] chr1:12336685:12336725:[+] nonBSJ supported CDS

circRNA 5':CCUCAAAUCCAU------AGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUG 3'


            ||||| |||: |:|| ||||| :||||| |:


target  3': GAGUUCAAGAAUACACUUCGGUAGUUU------UCCAG------UUUUAGUCG 5'

 -14.70 21 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:12337583:12337599:[+] target - chr1:12337589-12337590 G>A LINC-JP ICGC
chr1:12337583:12337603:[+] target - chr1:12337589-12337590 G>A LINC-JP ICGC
chr1:12337583:12337612:[+] target - chr1:12337589-12337590 G>A LINC-JP ICGC
chr1:12337583:12337624:[+] target - chr1:12337589-12337590 G>A LINC-JP ICGC
chrX:139866304:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866304:139866352:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866304:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC