Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865607:139865624:[+] chr11:77412853:77412871:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCAUGUCUUCC 3'


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target  3':CCCGAUAUCGAGAGAAGGA 5'

 -10.40 4 RIC-seq
chrX:139866345:139866359:[+] chr11:77378370:77378384:[-] nonBSJ supported CDS

circRNA 5':AAUCCGUGUCU-UCCA 3'


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target  3': UAGGCAGAGUUAGGC 5'

 -15.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:77412853:77412871:[-] target - chr11:77412859-77412860 T>C LINC-JP ICGC