Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866407:139866434:[+] chr7:127032483:127032502:[-] nonBSJ supported 5UTR

circRNA 5':UCUUCCAGCCUACUUGUGUCUUCCAACA 3'


            ||||| ||:|: ||||


target  3':CGAAGG------GAGCGGCCCC-GUUG 5'

 -12.00 16 RIC-seq
chrX:139865724:139865776:[+] chr7:127014609:127014645:[-] nonBSJ supported CDS

circRNA 5':CUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGU-CUUCCAGAAA 3'


            ||||||||||| ||| |||| |||| ||| |||


target  3':AAUCAAGAAGGU------AGAAAAAGAA-----------CACAUGAAAAGCUUA 5'

 -21.70 18 RIC-seq
chrX:139865804:139865826:[+] chr7:127014361:127014398:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAGAAAGA-----------------AAUCCAGGU 3'


            ||||| :||||| ||||||||


target  3':UCAGAA---UUUUCUAAAAAAUCCUCUUUAUCUUAGGUCCU 5'

 -17.50 18 RIC-seq
chrX:139865807:139865830:[+] chr7:127014391:127014418:[-] nonBSJ supported CDS

circRNA 5':UUCCAGAAAGAAA-----UCCAGGUCUUC 3'


            ||||| || ||| :||||| |||


target  3':UAGGUCCUUGUUUCCAACGGGUCC-GAAA 5'

 -18.40 18 RIC-seq
chrX:139866406:139866427:[+] chr7:127014613:127014637:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCUA--CUUGUGU-CU 3'


            ||||||| ||||||| ||


target  3':AAGAAGGUAGAAAAAGAACACAUGA 5'

 -17.60 1 RIC-seq
chrX:139866406:139866428:[+] chr7:127014613:127014637:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCUA--CUUGUGU-CUU 3'


            ||||||| ||||||| ||


target  3':AAGAAGGUAGAAAAAGAACACAUGA 5'

 -17.70 2 RIC-seq
chrX:139866406:139866429:[+] chr7:127014613:127014639:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCUA--CUUGUGU-CUUC 3'


            ||||||| ||||||| |||


target  3':AAGAAGGUAGAAAAAGAACACAUGAAA 5'

 -19.20 14 RIC-seq
chrX:139866620:139866649:[+] chr7:127014360:127014413:[-] nonBSJ supported CDS

circRNA 5':AGGUCU--------------------------UCCAGCAUCUCCAGGGCUUCCAGC 3'


            ||||| ||||| ||| :||||


target  3':CUCAGAAUUUUCUAAAAAAUCCUCUUUAUCUUAGGUCCUUGUU-UCCAACGGGUC 5'

 -16.90 1 RIC-seq