5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865687:139865730:[+] | chr3:47894052:47894084:[-] | nonBSJ supported | 3UTR |
circRNA 5':UCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUC 3' ||| || :||| ||| || |:||| |: |||:: target 3': GAC-CAAGAGGAG----AGGAUCU-AGGGU----UGAAUCGGA 5' |
-16.00 | 1 | RIC-seq |
| chrX:139865699:139865730:[+] | chr3:47894060:47894084:[-] | nonBSJ supported | 3UTR |
circRNA 5':ACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUC 3' || ||| || |:||| |: |||:: target 3': GGAG-AGGAUCU-AGGGU----UGAAUCGGA 5' |
-11.60 | 1 | RIC-seq |
| chrX:139865723:139865758:[+] | chr3:47894052:47894083:[-] | nonBSJ supported | 3UTR |
circRNA 5':UCUAGUUCUUCCAGAAAAAUCUAGAUCUUCC---AGUCA 3' || |||||:| :|||||||:: ||:| target 3': GACCAAGAGGAGA-----GGAUCUAGGGUUGAAUCGG 5' |
-19.00 | 1 | RIC-seq |
| chrX:139865723:139865758:[+] | chr3:47894052:47894084:[-] | nonBSJ supported | 3UTR |
circRNA 5':UCUAGUUCUUCCAGAAAAAUCUAGAUCUUCC---AGUCA 3' || |||||:| :|||||||:: ||:| target 3': GACCAAGAGGAGA-----GGAUCUAGGGUUGAAUCGGA 5' |
-18.80 | 26 | RIC-seq |
| chrX:139865815:139865840:[+] | chr3:47912744:47912770:[-] | nonBSJ supported | 5UTR |
circRNA 5':AGAAAUC--CAGGUCUUCCAGUCAGUCA 3' || || ||||| |||| |||||| target 3':ACUGAAGACGUCCAAAAGGG-AGUCAGA 5' |
-22.40 | 15 | RIC-seq |
| chrX:139865567:139865574:[+] | chr3:48019383:48019390:[-] | nonBSJ supported | CDS |
circRNA 5':UCCACCAA 3' |||||| target 3':UGGUGGUA 5' |
-9.90 | 41 | RIC-seq |
| chrX:139865567:139865574:[+] | chr3:48019384:48019390:[-] | nonBSJ supported | CDS |
circRNA 5':UCCACCAA 3' |||||| target 3': GGUGGUA 5' |
-9.30 | 2 | RIC-seq |
| chrX:139866348:139866390:[+] | chr3:47958316:47958357:[-] | nonBSJ supported | CDS |
circRNA 5':CCGUGUCUUCCAGCAAAUCC-ACGUCUUCCAACAAA-GCCAUGUC 3' |:| |||| || ||:||| ||||| | target 3':UGUA-AGAAC--CGACUUCUAUGUAGACAAAGACACCCGGUAGAC 5' |
-14.20 | 3 | RIC-seq |
| chrX:139866367:139866390:[+] | chr3:47958333:47958357:[-] | nonBSJ supported | CDS |
circRNA 5':CACGUCUUCCAACAAA-GCCAUGUC 3' ||:||| ||||| | target 3':AUGUAGACAAAGACACCCGGUAGAC 5' |
-11.90 | 2 | RIC-seq |
| chrX:139866514:139866549:[+] | chr3:47957868:47957904:[-] | nonBSJ supported | CDS |
circRNA 5':GUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCAC 3' ||| |||||||||:| |||| target 3':AAGACCCUCAACUCGGUACAGGAACUGACCCCGGUGG 5' |
-21.50 | 1 | RIC-seq |
| chrX:139866514:139866550:[+] | chr3:47957868:47957904:[-] | nonBSJ supported | CDS |
circRNA 5':GUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCACG 3' ||| |||||||||:| |||| target 3':AAGACCCUCAACUCGGUACAGGAACUGACCCCGGUGG 5' |
-23.10 | 9 | RIC-seq |
| chrX:139866567:139866586:[+] | chr3:48040212:48040240:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCU-----UCCAACUAAG----CUACG 3' |||| |||||| |:|| target 3':UCAGACAAAAAGGUUGUCAAAGAGGGUGU 5' |
-13.00 | 1 | RIC-seq |
| chrX:139866567:139866592:[+] | chr3:48040212:48040238:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCU-----UCCAACUAAGCUACGUCUUCC 3' |||| |||||| || |||:|| target 3':UCAGACAAAAAGGUUG--UCAA---AGAGGGU 5' |
-15.30 | 1 | RIC-seq |
| chrX:139866567:139866604:[+] | chr3:48040212:48040248:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCU-----UCCAACUAAGCUACGUCUUCCAACAAAUCCAUG 3' |||| |||||| || |||:|| |||| ||| target 3':UCAGACAAAAAGGUUG--UCAA---AGAGGG-UGUUGUAGUAG 5' |
-20.80 | 1 | RIC-seq |
| chrX:139866585:139866627:[+] | chr3:48040212:48040258:[-] | nonBSJ supported | CDS |
circRNA 5':CGUCU-----UCCAACAAAUCCAUGUCUUCCU--AUAUC-UCC-AGGUCUUC 3' |||| ||||||| |||:|| |:||| || |||:||: target 3':UCAGACAAAAAGGUUGUCAA-----AGAGGGUGUUGUAGUAGUUUCCGGAGA 5' |
-30.00 | 1 | RIC-seq |
| chrX:139866585:139866646:[+] | chr3:48040212:48040258:[-] | nonBSJ supported | CDS |
circRNA 5':CGUCU-----UCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCA--GCAUC-UCCAGGGCUUCC 3' |||| ||||||| |||:||| :|||| || |:|||:|| target 3':UCAGACAAAAAGGUUGUCAA-----------------------AGAGGGUGUUGUAGUAGUUUCCGGAGA 5' |
-36.70 | 15 | RIC-seq |
| chrX:139866585:139866646:[+] | chr3:48040213:48040258:[-] | nonBSJ supported | CDS |
circRNA 5':CGUCU-----UCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCA--GCAUC-UCCAGGGCUUCC 3' |||| ||||||| |||:||| :|||| || |:|||:|| target 3': CAGACAAAAAGGUUGUCAA-----------------------AGAGGGUGUUGUAGUAGUUUCCGGAGA 5' |
-35.60 | 1 | RIC-seq |
| chrX:139866620:139866652:[+] | chr3:48040211:48040244:[-] | nonBSJ supported | CDS |
circRNA 5':AGGUCU-----UCCAGCA---UCUCCAGGGCUUCCAGCAUC 3' ||||| ||||:|| ||||| ||:||| target 3':AUCAGACAAAAAGGUUGUCAAAGAGGGU------GUUGUA 5' |
-22.50 | 19 | RIC-seq |
| chrX:139866620:139866652:[+] | chr3:48040212:48040244:[-] | nonBSJ supported | CDS |
circRNA 5':AGGUCU-----UCCAGCA---UCUCCAGGGCUUCCAGCAUC 3' ||||| ||||:|| ||||| ||:||| target 3': UCAGACAAAAAGGUUGUCAAAGAGGGU------GUUGUA 5' |
-21.80 | 1 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139866567:139866592:[+] | circRNA | - | chrX:139866592-139866593 | C>A | LICA-CN | ICGC |
| chrX:139866567:139866604:[+] | circRNA | - | chrX:139866592-139866593 | C>A | LICA-CN | ICGC |
| chrX:139866585:139866627:[+] | circRNA | - | chrX:139866592-139866593 | C>A | LICA-CN | ICGC |
| chrX:139866585:139866646:[+] | circRNA | - | chrX:139866592-139866593 | C>A | LICA-CN | ICGC |