Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865434:139865448:[+] chr1:186313686:186313700:[-] nonBSJ supported CDS

circRNA 5':CCUGAGCUUCCAGAA 3'


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target  3':AGACUCGAAGGUGUC 5'

 -21.50 8 RIC-seq
chrX:139865434:139865462:[+] chr1:186316546:186316574:[-] nonBSJ supported CDS

circRNA 5':CCUGAGCUUCC-AGAAAAUCCACAUCUUCC 3'


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target  3':CGACU-GAGUGUUCUAGUAGGUGUAGAAGA 5'

 -28.00 13 RIC-seq
chrX:139865434:139865481:[+] chr1:186316546:186316591:[-] nonBSJ supported CDS

circRNA 5':CCUGAGCUUCC-AGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCCG 3'


            |||| ||: | ||| |||||||||||| |: ||


target  3':CGACU-GAGUGUUCUAGUAGGUGUAGAAGAAACAACGAUC-CGACUGG 5'

 -28.40 13 RIC-seq
chrX:139866136:139866162:[+] chr1:186296713:186296765:[-] nonBSJ supported CDS

circRNA 5': GUCUUCC-AGA-CUA-----------------------UCCAUGUCUUCCAG 3'


            || :|| ||| ||| || |||||||||


target  3':UCACCGGGUUCUAGAUAAACAUCUCUGACUCUCCAAAGAAGUGACAGAAGGUA 5'

 -17.60 11 RIC-seq
chrX:139866139:139866162:[+] chr1:186296717:186296765:[-] nonBSJ supported CDS

circRNA 5':UUCC-AGA-CUA-----------------------UCCAUGUCUUCCAG 3'


            ||| ||| ||| || |||||||||


target  3':CGGGUUCUAGAUAAACAUCUCUGACUCUCCAAAGAAGUGACAGAAGGUA 5'

 -17.50 3 RIC-seq
chrX:139866262:139866288:[+] chr1:186296713:186296765:[-] nonBSJ supported CDS

circRNA 5': GUCUUCC-AGA-CUA-----------------------UCCAUGUCUUCCAG 3'


            || :|| ||| ||| || |||||||||


target  3':UCACCGGGUUCUAGAUAAACAUCUCUGACUCUCCAAAGAAGUGACAGAAGGUA 5'

 -17.60 11 RIC-seq
chrX:139866268:139866288:[+] chr1:186296735:186296765:[-] nonBSJ supported CDS

circRNA 5':CAGACUA----------UCCAUGUCUUCCAG 3'


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target  3':CUCUGACUCUCCAAAGAAGUGACAGAAGGUA 5'

 -16.50 1 RIC-seq