Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866553:139866591:[+] chr5:112874794:112874833:[+] nonBSJ supported CDS

circRNA 5':UUCCAGAAAAUAU----AUGUCUUCCAACUAAGCUACGUCUUC 3'


            ||||| ||:||||||| ||:| ||||


target  3':UAGGUCAACAAGAAUUUUAUAGAAGGUC--UUUGUAA-AGAAA 5'

 -21.10 5 RIC-seq
chrX:139866553:139866600:[+] chr5:112874784:112874833:[+] nonBSJ supported CDS

circRNA 5':UUCCAGAAAAUAU----AUGUCUUCCAACUAAGCUACGUCUUC--CAACAAAUC 3'


            ||||| ||:||||||| ||:| |||| | |||||


target  3':UAGGUCAACAAGAAUUUUAUAGAAGGUC--UUUGUAA-AGAAAAUGAAGUUUA 5'

 -21.20 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:112874784:112874833:[+] target - chr5:112874820-112874821 A>T LINC-JP ICGC
chr5:112874794:112874833:[+] target - chr5:112874820-112874821 A>T LINC-JP ICGC
chrX:139866553:139866600:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC