Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866611:139866650:[+] chr8:68864667:68864706:[+] nonBSJ supported CDS

circRNA 5':UAUAUCUCCAGGUCUUCCAGCAUCUCCAGGG-CUUCCAGCA 3'


           ||:|: ||||: || |||||||| ||| ||


target  3':GUGUGCGCGUCCGCUUCGACGAAGAGGUCCAGGAACCGCG 5'

 -29.30 16 RIC-seq
chrX:139866611:139866650:[+] chr8:68864668:68864706:[+] nonBSJ supported CDS

circRNA 5':UAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUCCA--GCA 3'


           ||:|: ||||: || |||||||| ||| ||


target  3':GUGUGCGCGUCCGCUUCGACGAAGAGGUCC---AGGAACCGC 5'

 -28.60 1 RIC-seq
chrX:139866618:139866650:[+] chr8:68864667:68864699:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGCAUCUCCAGGG-CUUCCAGCA 3'


            ||||: || |||||||| ||| ||


target  3':CGUCCGCUUCGACGAAGAGGUCCAGGAACCGCG 5'

 -28.40 3 RIC-seq
chrX:139866676:139866721:[+] chr8:68939469:68939507:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCA-----GCAUCUCUGUG-UCUUCCAGCAUCUUCAUGUCUUCCAAC 3'


            ||||||| :|| |||||| |||||| |||:|||||


target  3':AGGAAGGUUCCCUUGU--AGACACAAGAAGG-----------CAGGAGGUUC 5'

 -35.90 2 RIC-seq
chrX:139866676:139866723:[+] chr8:68939466:68939507:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCA-----GCAUCUCUGUG-UCUUCCAGCAUCUUCAUGUCUUCCAA-CAA 3'


            ||||||| :|| |||||| |||||| |||:||||| ||


target  3':AGGAAGGUUCCCUUGU--AGACACAAGAAGG-----------CAGGAGGUUCGUC 5'

 -36.70 26 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:68864667:68864706:[+] target - chr8:68864703-68864704 T>C PACA-CA ICGC
chr8:68864668:68864706:[+] target - chr8:68864703-68864704 T>C PACA-CA ICGC
chr8:68939466:68939507:[+] target - chr8:68939477-68939478 A>T BTCA-JP ICGC
chr8:68939466:68939507:[+] target - chr8:68939478-68939479 C>T BTCA-JP ICGC
chr8:68939469:68939507:[+] target - chr8:68939477-68939478 A>T BTCA-JP ICGC
chr8:68939469:68939507:[+] target - chr8:68939478-68939479 C>T BTCA-JP ICGC