Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865913:139865948:[+] chrX:13794376:13794412:[-] nonBSJ supported CDS

circRNA 5':UCCAGGUCUU-C-CA-GCCAAUAUAUGUCUUCCUGA-AGA 3'


            |||| ||:| | || |||| ||| ||| ||


target  3': GGUCGAGGACGUGUCCGGUGU--UACUUGUCCACUAUCC 5'

 -19.70 1 RIC-seq
chrX:139866675:139866706:[+] chrX:13797942:13797974:[-] nonBSJ supported CDS

circRNA 5':CGUCU----UCCA-GCAUCUCUGUGUCUUCCAGCAUC 3'


            ||| |||| :|| ||||: |||| ||:|


target  3':ACAGCCUAUAGGUGUGUCUAGACG----AGGU-GUGGG 5'

 -19.40 2 RIC-seq
chrX:139865626:139865666:[+] chrX:13832887:13832920:[-] nonBSJ supported Intron

circRNA 5': AUAAUUUCAA--GGUCUUCCAUCAAAUACAGAUCUUC-CAGCUA 3'


            |:|||| |||| |:|||: || ||:|:


target  3':UUGUUAAUACCACCCAG---------UGUGUUGUU-AGUGUUGG 5'

 -13.60 1 RIC-seq
chrX:139865626:139865666:[+] chrX:13832887:13832930:[-] nonBSJ supported Intron

circRNA 5': AUAAUUUCAA--GGUCUUCCAUCAAAUACAGAUCUUCCAGCUA 3'


            |:|||| |||| || ||| :|||: :|:|| |||


target  3':UUGUUAAUACCACCCAGUGUGUUGUUAGUGUUGGGGAGAACGAC 5'

 -21.20 1 RIC-seq
chrX:139866714:139866749:[+] chrX:13792096:13792142:[-] nonBSJ supported Intron

circRNA 5':CUUCCAAC-AACU-----ACCCAG-UCUUCCA----UCAACUGGCUC 3'


            ||||| |||| ||| ||||| ||| ||||||


target  3':AAAGGUCUCUUGACCCACUGGAAAAAGAAGUUUAAAAGUAGACCGAA 5'

 -23.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:13792096:13792142:[-] target - chrX:13792099-13792100 C>T LAML-KR ICGC