Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865403:139865462:[+] chr9:128002456:128002517:[-] nonBSJ supported CDS

circRNA 5':CUUCC-AAUAA-UCUCAA-GG--UCUUCCAGAUAAUCCUGAGCUUC--CAGAAAAUCCACAUCUUCC 3'


            |:|| ||||| :|||| || |||| || ||:|: |||||| |||||


target  3':AAGGGUUUAUUCGGAGUCGCCAAAGAAAGUAAAAUCACUCUUGGUACCGUCUUUAA-----AGAAGU 5'

 -27.40 2 RIC-seq
chrX:139865638:139865665:[+] chr9:128001044:128001069:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAUCAAAUACAG-AUCUUCCAGCU 3'


            |||| |||||| ||| ||||||||:|


target  3': GAAGA-AGUUUA-GUCUUAGAAGGUUGU 5'

 -25.80 2 RIC-seq
chrX:139866405:139866426:[+] chr9:127998990:127999014:[-] nonBSJ supported CDS

circRNA 5':UGUCUUC-----CAGCCUACUUGUGUC 3'


            |||||| |||| | |||| ||


target  3':UCAGAAGUUACAGUCGUA-GAAC-CAC 5'

 -15.00 2 RIC-seq