Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865835:139865866:[+] chr5:138264933:138264962:[+] nonBSJ supported CDS

circRNA 5':CAGUCAGUGUCUUCCAGAAAAAUCUAC-GUCUU 3'


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target  3': UCAGUCUCAGUAGGUUGAGG-AGUCCCCAGA 5'

 -22.90 2 RIC-seq
chrX:139866714:139866733:[+] chr5:138269622:138269638:[+] nonBSJ supported CDS

circRNA 5': CUUCCA--ACAACUACCCAGUC 3'


            |||||| ||| |||:


target  3':AGAAGGUACUGU------GUCGU 5'

 -10.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:138264933:138264962:[+] target 3148663 chr5:138264938-138264939 CCT>C Hereditary_diffuse_gastric_adenocarcinoma ClinVar
chr5:138264933:138264962:[+] target 2573254 chr5:138264940-138264941 TG>T Hereditary_diffuse_gastric_adenocarcinoma ClinVar
chr5:138264933:138264962:[+] target 2573293 chr5:138264961-138264962 CTT>C Hereditary_diffuse_gastric_adenocarcinoma|not_provided ClinVar
chr5:138269622:138269638:[+] target 1344681 chr5:138269627-138269628 T>TGTCATGGAAGATGAA Craniosynostosis_syndrome ClinVar