Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865936:139865975:[+] chr5:138223240:138223280:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCUGAAGAUCCACGUCUUC-CAGAA--AAUCCAUGUCU 3'


            |||| || | |||| |||| ||| |||| ||::|


target  3':AAGAAAGAGUAA-AGGUA-AGAAACGUCGAAGUUAGUUAUGGU 5'

 -14.50 6 RIC-seq
chrX:139865966:139866020:[+] chr5:138223236:138223289:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAA--UCCAUGUCUUC-CAGUAACCUCCCAGUCUU--CCAGAAA 3'


            ||| |: |||| ||||| |||| |||: ||:|| |||:||


target  3':GAGGAAUUGAAGAAAGAGUAAAGGUA-AGAAACGUCGAA-----GUUAGUUAUGGUUUUC 5'

 -22.90 6 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:138223236:138223289:[+] target 1958939 chr5:138223236-138223237 CT>C Patterned_macular_dystrophy_2|not_provided ClinVar
chr5:138223236:138223289:[+] target 981830 chr5:138223241-138223242 G>GCC Hereditary_breast_ovarian_cancer_syndrome ClinVar
chr5:138223240:138223280:[+] target 981830 chr5:138223241-138223242 G>GCC Hereditary_breast_ovarian_cancer_syndrome ClinVar