Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865763:139865789:[+] chr5:169025515:169025538:[+] nonBSJ supported CDS

circRNA 5':GUGUCUUCCAGAAAGAAAUCCAG-GUCU 3'


            |:||||||||| |||| |||


target  3':AAUAGAAGGUCUCAU----GGUCUCAGC 5'

 -24.30 1 RIC-seq
chrX:139865783:139865828:[+] chr5:169025515:169025544:[+] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAG-GUCU 3'


            |||| |:||||||||| |||| |||


target  3':AUCCACA-------------AUAGAAGGUCUCAU----GGUCUCAGC 5'

 -25.20 21 RIC-seq
chrX:139865802:139865828:[+] chr5:169025515:169025538:[+] nonBSJ supported CDS

circRNA 5':GUGUCUUCCAGAAAGAAAUCCAG-GUCU 3'


            |:||||||||| |||| |||


target  3':AAUAGAAGGUCUCAU----GGUCUCAGC 5'

 -24.30 1 RIC-seq