Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866774:139866801:[+] chr4:13594032:13594063:[-] nonBSJ supported Intron

circRNA 5':CAGUGUGCUGA-UCUUCU-GACAUU--CAGGU 3'


            ||| |:||| ||| || :||| |||:


target  3':UUCAGAUGACAAAGAUGAGUUGUUACUGUCUU 5'

 -17.00 1 RIC-seq
chrX:139866774:139866802:[+] chr4:13593968:13594002:[-] nonBSJ supported Intron

circRNA 5':CAGU---GUGCUGA-UCUUCUGACAUUCA-GGUC 3'


            ||| :| ||: :|:||::||| ||||


target  3':UUCAAUCUAGGAUAGGGGAGGUUGUCGUUACCAGA 5'

 -17.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866774:139866801:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866774:139866802:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC